Denolle-Lab · mdenolle · Jul 7, 2026
diff --git a/quarto/_quarto.yml b/quarto/_quarto.yml
@@ -3,6 +3,10 @@ project:
   output-dir: _site
   render:
     - "*.qmd"
+  resources:
+    # Standalone workflow chart (self-contained design; served verbatim and
+    # linked from the navbar). Kept as raw HTML so its CSS never fights the theme.
+    - workflow.html
 
 execute:
   freeze: auto      # cache executed cells; re-run only when the .qmd changes
@@ -25,6 +29,8 @@ website:
     left:
       - text: "Home"
         file: index.qmd
+      - text: "Workflow"
+        href: workflow.html
       - text: "Theory"
         menu:
           - text: "1 · Measurement — marginal errors"

diff --git a/quarto/_site/index.html b/quarto/_site/index.html
@@ -329,6 +329,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/survey-best-practices.html b/quarto/_site/survey-best-practices.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/survey-references.html b/quarto/_site/survey-references.html
@@ -297,6 +297,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/survey-synthetic-demo.html b/quarto/_site/survey-synthetic-demo.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/theory-bayesian-measurement.html b/quarto/_site/theory-bayesian-measurement.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/theory-measurement-uq.html b/quarto/_site/theory-measurement-uq.html
@@ -349,6 +349,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/theory-processing-depth.html b/quarto/_site/theory-processing-depth.html
@@ -349,6 +349,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/theory-uq.html b/quarto/_site/theory-uq.html
@@ -349,6 +349,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-00-measurement.html b/quarto/_site/tutorial-00-measurement.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-00-measurement.ipynb b/quarto/_site/tutorial-00-measurement.ipynb
@@ -25,7 +25,7 @@
         "companion to the [marginal-errors](theory-measurement-uq.qmd) and\n",
         "[Bayesian-measurement](theory-bayesian-measurement.qmd) theory pages."
       ],
-      "id": "2bccd63a-6e9f-45c3-a173-55944deed471"
+      "id": "aa89b9cc-4759-44d9-aa21-154aa3316838"
     },
     {
       "cell_type": "code",
@@ -75,7 +75,7 @@
         "  injecting a spurious seasonal $\\delta v/v$ into a late measurement\n",
         "  window but not an early one."
       ],
-      "id": "ea7a8e09-f483-4db6-a12f-47df94c183c9"
+      "id": "b139c632-1a34-4363-b896-2c9119fb0ad7"
     },
     {
       "cell_type": "code",
@@ -146,7 +146,7 @@
         "correlation image $\\mathrm{CC}(\\varepsilon,t)$; its bright ridge *is*\n",
         "the apparent $\\delta v/v(t)$."
       ],
-      "id": "49cfeac3-1e08-4f4d-87da-b53cd2b3e101"
+      "id": "0290effd-54f2-4eaa-9014-c18ed96157b9"
     },
     {
       "cell_type": "code",
@@ -187,7 +187,7 @@
         "Measuring the two branches separately exposes it; using **both**\n",
         "branches together averages it away."
       ],
-      "id": "46b82f02-e274-4e02-b90a-03389f442012"
+      "id": "229fc9cc-9c0e-4e12-8ced-9dc7de37d4e3"
     },
     {
       "cell_type": "code",
@@ -229,7 +229,7 @@
         "formula turns the peak correlation $\\mathrm{CC}(t)$ into a per-epoch\n",
         "standard error."
       ],
-      "id": "97f39142-4d96-4fca-aa80-9e1f0110eda7"
+      "id": "e0582668-f0bb-4687-95a4-c5e6496a63ad"
     },
     {
       "cell_type": "code",
@@ -272,7 +272,7 @@
         "temporal correlation into one **time-dependent measurement covariance**\n",
         "$C_d$. One call does the whole thing:"
       ],
-      "id": "42d2b8ae-8fee-4996-80cb-8a5fed2e76a2"
+      "id": "e8b8fd8c-3f9b-440b-b139-cd4c60903a3b"
     },
     {
       "cell_type": "code",
@@ -407,7 +407,7 @@
         "\n",
         "### References"
       ],
-      "id": "aa773af6-7f22-4d2a-a7c4-6fd6d049ffa8"
+      "id": "02744d08-04c8-4eab-bc5c-019c7c90dc2f"
     }
   ],
   "nbformat": 4,

diff --git a/quarto/_site/tutorial-01-data.html b/quarto/_site/tutorial-01-data.html
@@ -349,6 +349,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-02-forward.html b/quarto/_site/tutorial-02-forward.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-03-inversion.html b/quarto/_site/tutorial-03-inversion.html
@@ -330,6 +330,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-04-coupling.html b/quarto/_site/tutorial-04-coupling.html
@@ -327,6 +327,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-05-interpretation.html b/quarto/_site/tutorial-05-interpretation.html
@@ -327,6 +327,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/tutorial-06-endtoend.html b/quarto/_site/tutorial-06-endtoend.html
@@ -327,6 +327,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/uncertainty-3-stress.html b/quarto/_site/uncertainty-3-stress.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/quarto/_site/uncertainty-4-attribution.html b/quarto/_site/uncertainty-4-attribution.html
@@ -346,6 +346,10 @@
   <li class="nav-item">
     <a class="nav-link active" href="./index.html" aria-current="page"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./workflow.html"> 
+<span class="menu-text">Workflow</span></a>
   </li>  
   <li class="nav-item dropdown ">
     <a class="nav-link dropdown-toggle" href="#" id="nav-menu-theory" role="link" data-bs-toggle="dropdown" aria-expanded="false">