Correct GROUND_TRUTH mappings against converter source

[swaraj-neu]

Correct GROUND_TRUTH mappings against converter source

Five entries listed source columns that do not match what the hand-written
MSstatsConvert converters use.

• proteome_discoverer Intensity: PDtoMSstatsFormat defaults which.quantification
  to Precursor.Area, not Intensity
• spectronaut ProductCharge: clean_Spectronaut resolves F.Charge or F.FrgZ
• spectronaut PeptideSequence: PEP.StrippedSequence is never accepted as a fallback
• metamorpheus PeptideSequence: Base Sequence is not in req_cols
• metamorpheus PrecursorCharge: Peak Charge is not in req_cols

Closes #24

[coderabbitai]

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