Skip to content

Fuzz scientific inputs and pin deterministic artifacts - #172

Merged
dnncha merged 1 commit into
mainfrom
reliability-fuzz
Oct 28, 2026
Merged

dnncha merged 1 commit into
mainfrom
reliability-fuzz

Conversation

@dnncha

@dnncha dnncha commented Oct 28, 2026

Copy link
Copy Markdown
Owner

Adds the next reliability layer on top of #171.

  • FASTQ fuzzing: generated valid records round-trip; known corruption modes always raise; arbitrary text never raises unexpected exception types.
  • Count-table fuzzing: valid tables round-trip losslessly; arbitrary text either parses into invariant-preserving tables or raises a documented parse error.
  • AssaySpec fuzzing: arbitrary TOML either loads or raises AssaySpecError.
  • Deterministic artifacts: assignment TSVs are byte-identical and conserve counts; panel certificates repeat exactly; feature-matrix artifact sets are byte-identical.
  • Mutation-sensitivity cases: radius-vs-best, exact-vs-k1, unique-only-vs-count-all, and lossless-vs-float counts are each distinguishable.

Local gates: make quality (42 typed files, lint, 2128 pytest passed / 11 skipped, compat39 14 passed).

@dnncha
dnncha merged commit 5f585dd into main Oct 28, 2026
10 of 28 checks passed
@chatgpt-codex-connector

chatgpt-codex-connector Bot commented Oct 28, 2026 •

Copy link
Copy Markdown

Codex Review Summary

This comment shows the latest Codex review activity on this pull request.

Review Status Commit Review trigger
📝 Code Review ✅ Completed 2026-10-28T11:23:43.584639Z b5d8015 PR opened
ℹ️ About Codex in GitHub

Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

  • Open a pull request for review
  • Mark a draft as ready
  • Comment "@codex review" or "@codex security review".

Codex reacts with 👀 while any review is running, comments if it has suggestions, and reacts with 👍 once all reviews finish with no findings.

@dnncha
dnncha deleted the reliability-fuzz branch October 28, 2026 11:20

@chatgpt-codex-connector chatgpt-codex-connector Bot left a comment

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

💡 Codex Review

Here are some automated review suggestions for this pull request.

Reviewed commit: b5d80158ae

ℹ️ About Codex in GitHub

Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

  • Open a pull request for review
  • Mark a draft as ready
  • Comment "@codex review".

If Codex has suggestions, it will comment; otherwise it will react with 👍.

Codex can also answer questions or update the PR. Try commenting "@codex address that feedback".

Comment thread python/tests/test_scientific_fuzz.py
Comment thread python/tests/test_scientific_fuzz.py
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant