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Add path agreement and count-isolation invariants - #173
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Extends the scientific invariants with path agreement and count isolation.
Matcherand top-level scan paths must return identical status, target, distances, and match count for generated targets/reads across scan, Hamming, exact, and both policies.safe_for_k1_hammingmust equal the actual minimum pairwise Hamming distance, andminimum_hamming_distancemust match it.Local gates:
make quality(2131 pytest passed / 11 skipped, compat39 14, typecheck 42 files, lint clean).