External software

Front-end third party tools

• AngularJS - https://angularjs.org/

• Apache ECharts - https://echarts.apache.org/en/index.html

• Bootstrap - https://getbootstrap.com/

• Bootbox.js - http://bootboxjs.com/

• Pako.js - https://github.com/nodeca/pako

• Underscore.js - https://underscorejs.org/

• noUiSlider - https://refreshless.com/nouislider/

• Parallel.js - https://parallel.js.org/

Analysis pipeline third party software

• BLASTN - https://blast.ncbi.nlm.nih.gov/Blast.cgi, Public Licence

• SnpEff - https://pcingola.github.io/SnpEff/, License: LGPLv3

• Pangolin - https://github.com/cov-lineages/pangolin, License: GNU General Public License v3.0

• Biopython - https://biopython.org/, LICENSE: Biopython License Agreement