docs(opentargets): clarify diseases score meaning and EFO/MONDO IDs (#168)#240
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docs(opentargets): clarify diseases score meaning and EFO/MONDO IDs (#168)#240Elarwei001 wants to merge 1 commit into
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…cverse#168) Clarify in the documentation that the `diseases` resource `score` is OpenTargets' single overall target–disease association score (0–1) aggregated across all data types/sources (not a per-data-source score), and that the returned `disease.id` values are EFO-mapped traits that include not only MONDO diseases but also HP phenotypes and EFO measurements (e.g. "blood protein measurement"). gget returns the associations exactly as OpenTargets reports them; documented how to filter to MONDO terms only. Also updated the diseases example table to the current post-rewrite column names. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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I checked this locally. The PR only touches two docs files, and pre-commit passes on those files. The failing pre-commit.ci check is mypy, with errors in existing gget/*.py files, so it looks like the failure may be unrelated to this docs-only change. Thanks! |
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Resolves #168
Summary
gget opentargets: Clarified the meaning of thediseasesresourcescorecolumn and the disease IDs in the documentation (resolves issue 168).Testing
Documentation-only change (no functional code modified), so no new unit tests were required.