Radmeth optimizations for continuous values - #302

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andrewdavidsmith merged 33 commits into

radmeth-optimizations

Oct 22, 2025

Commits on Oct 13, 2025

src/radmeth/radmeth_optimize.cpp: added an implementation for digamma functions via Chebyschev polynomial approximation for the gradient calculations. Number of coeffs to use is still to be determi…
andrewdavidsmith
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Commits on Oct 15, 2025

Makefile.am: adding additional sources
andrewdavidsmith
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src/dnmtools.cpp: adding the radmeth-nano command for doing DMPs on nanopore
andrewdavidsmith
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src/radmeth/radmeth_design.hcpp: adding files for the Design class separated from the Regression classes
andrewdavidsmith
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../src/radmeth/radmeth_model_nano.hcpp: adding files for the RegressionNano class for radmeth-nano
andrewdavidsmith
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../src/radmeth/radmeth_optimize_nano.hcpp: adding optimization code in a separate file for optimizing paramters of the model for nano with fractional observations
andrewdavidsmith
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src/radmeth/radmeth_utils.hcpp: adding files for common functions shared by radmeth and radmeth-nano
andrewdavidsmith
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src/radmeth/radmeth.cpp: factoring out code shared by radmeth and radmeth-nano
andrewdavidsmith
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src/radmeth/radmeth_model.hcpp: moving Design-related code to a separate file
andrewdavidsmith
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src/radmeth/radmeth_optimize.cpp: adding back the code for the discrete optimization, with the newer code moved to the new file radmeth_optimize_nano.hcpp for fractional
andrewdavidsmith
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Commits on Oct 16, 2025

src/radmeth/radmeth_nano.cpp: adding this file, forgotten previously, and almost identical to regular radmeth.cpp
andrewdavidsmith
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Commits on Oct 20, 2025

Commits on Oct 22, 2025

macOS clang fixes: from_chars for float to sscanf and sprintf to snprintf
andrewdavidsmith
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