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PSF compensation + focal curvature follow-ups#124

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FIrgolitsch wants to merge 5 commits into
pr-t-attenuation-methodsfrom
pr-v-psf-focal
Open

PSF compensation + focal curvature follow-ups#124
FIrgolitsch wants to merge 5 commits into
pr-t-attenuation-methodsfrom
pr-v-psf-focal

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@FIrgolitsch

@FIrgolitsch FIrgolitsch commented May 20, 2026

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Stacked PR 21/22 — review order: #115#97#98#99#100#101#108#106#107#87#116#110#111#40#112#113#117#118#120#121#122#123#124#125

Base: pr-t-attenuation-methods. Retargets to main as upstream PRs merge.


PSF compensation + focal curvature follow-ups

Stacked on pr-t-attenuation-methods. Five commits refining focal-curvature detection and the model-free PSF compensation pipeline.

Commits

  • focal_curvature detect improvements
  • focal_curvature --zr_initial CLI flag (initial axial-radius seed for the fit)
  • psf model-free pipeline integration
  • psf model-free numerical fixes
  • compensate_psf toggle wiring in Nextflow

Docs gaps

--zr_initial and the compensate_psf Nextflow toggle are not yet in docs/SCRIPTS_REFERENCE.md / docs/NEXTFLOW_WORKFLOWS.md; follow-up doc PR will cover these to keep this chain tree-identical to dev.

This was referenced May 20, 2026
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