feat: add manual-alignment export, refinement, and global-transform tools#107
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PR #107 — Manual-Alignment Tools
Adds three scripts for human-in-the-loop slice alignment workflows:
linum_export_manual_align— export common-space slices for manual review (e.g. in ITK-SNAP)linum_refine_manual_transforms— combine a manual transform with an image-based residual correctionlinum_estimate_global_transform— fit a single global transform to a stack as a starting point for refinementUsed by the
refine_manual_transformsprocess introduced in #108.